Run All

If the generation of the VOIs can be done with a fixed set of configuration parameters, there is no need to interactively step through the different stages. Rather, the data can be prepared, all processing steps be performed unattended, and then the results inspected and saved. To do so please proceed as follows:

1. Make sure the parameters on the all stages are set appropriately. This can also be ensured by loading a specific protocol file.
2. Load the PET image, and define the crop box if necessary.
3. If there is an MR as well, load the image, and define the crop box.
4. Activate the "Run All" button from the lateral taskbar. All steps up to the VOI outlining will be performed.
5. Inspect the relevant intermediate results such as MR segmentation, spatial normalization, rigid matching to ensure the resulting VOIs are meaningful.
6. Save the VOIs and calculated the statistics.
7. Save a protocol file.